MitoMiner update coming soon!

In the next few weeks we will be updating all the data in MitoMiner, upgrading the underlying InterMine software and making various bug fixes. If you have any data or feature requests for this upcoming release please contact us at mitominer@mrc-mbu.cam.ac.uk 

MitoMiner Version 4.0 Released!

We have made a significant changes to MitoMiner to produce version 4.0. The most noticeable change is moving from a UniProt protein centric database to a Ensembl Gene centric database. We have also narrowed the focus of the database to 6 organisms: H. sapiens, M. musculus, R. norvegicus, D. rerio, S. cerevisiae, S. pombe. This has significantly reduced redundant entries and has made the database much easier to navigate and search. We have also included many new data types including phenotypes and interaction data. If you have any questions or comments you can write to us at mitominer@mrc-mbu.cam.ac.ukThe old protein centric version is still available and can be found here: http://mitominer.mrc-mbu.cam.ac.uk/release-3.1-archive/  
 
 
Enhancements included for Version 4.0:
 
Zebrafish
We now include annotation and homology data for Zebrafish. 
 
Phenotypes
We include phenotype data from MGI, Zebrafish and S. cerevisiae.
 
Interaction data
We include protein and genetic interaction data from BioGRID for all the species included in MitoMiner.
 
Gene Homology
We have now switched from the NCBI's HomoloGene to Ensembl Compara. 
 
Mitochondrial Targeting Sequences
We now include MitoFates predictions (http://mitf.cbrc.jp/MitoFates/cgi-bin/top.cgi) as well as iPSORT, MitoProt and TargetP. We also now include cleavage site predictions from MitoFates and MitoProt.
 
Integrated Mitochondrial Protein Index (IMPI) - reference set
MitoMiner now includes an updated IMPI dataset of mitochondrial genes that was created using the new data in MitoMiner 4.0. Further details can be found on the IMPI page: http://mitominer.mrc-mbu.cam.ac.uk/release-4.0-beta/impi.do
 
Many of the other datasources have been refreshed and updated. Further details can be found here: http://mitominer.mrc-mbu.cam.ac.uk/release-4.0-beta/dataCategories.do
 
 
Users of Version 3.1
The new version of MitoMiner uses a new database structure. This was unavoidable and unfortunately means that we are unable to transfer user accounts from the previous version. Therefore existing users will have to set up a new account in v4.0. If you have any queries that you have built in the last version that you would like to use in this new version please contact us. We will be happy to convert them to be compatible with the new database structure.

 

DOWNTIME: Friday 29th April 2016 for upgrade to version 4!

MitoMiner will be offline from 09:00 GMT for approximately 8 hours to allow the deployment of version 4.0! Thank you for your patience and apologies for any inconvenience this may cause.

New MitoMiner publication

We are pleased to announce a new MitoMiner publication in NAR that covers the recent updates to the resource: 

MitoMiner v3.1, an update on the mitochondrial proteomics database. Nucleic Acids Res. 2015 Oct 1. pii: gkv1001. [Epub ahead of print]

Smith, A.C. and Robinson, A.J.

PMID: 26432830 

DOWNTIME: 16th-18th October

MitoMiner will be unavailable from 16:00 GMT Friday 16th of October until 15:00 GMT Sunday 18th of October. This is the result of a scheduled power outage to allow essential maintenance on a electrical substation supplying Cambridge Biomedical Campus (where the MitoMiner server is based). Sorry for any inconvenience this may cause.

DOWNTIME: Weekend 26th-27th July

MitoMiner will be unavailable from 14:00 GMT Saturday 25th of July until 14:00 GMT Sunday 26th of July. This is the result of a scheduled power outage to allow repairs to the main electricity supply to the building. Sorry for any inconvenience this may cause.

DOWNTIME: Tuesday 2nd of June

MitoMiner will be unavailable from 16:30 GMT Tuesday 2nd of June for several hours. This is required for ongoing upgrades to IT infrastructure. Sorry for any inconvenience this may cause.

DOWNTIME: Friday 1st of May

MitoMiner will be unavailable from 5pm GMT Friday 1st of May for approximately 2 hours. This is required for server maintenance. 

Sorry for any inconvenience this may cause.

DOWNTIME: Friday 27th March until Sunday 29th March

MitoMiner will be unavailable from 6pm GMT Friday 27th March until Sunday 29th March. This is due to a scheduled power cut required for building maintenance.

Sorry for any inconvenience this may cause.

Minor Update

MitoMiner has been updated to include the latest versions of UniProt, Gene Ontology, OMIM and KEGG. If you have any questions, problems, bug reports or general feedback about the new release please contact us at MitoMiner [at] mrc-mbu.cam.ac.uk .  

Pages

Subscribe to MitoMiner Support RSS